Metagenomic Sequencing Panel

Detection of Bacterial Pathogen and Microbe Classification

Overview

Metagenomic Sequencing

Celemics’ Metagenomic Sequencing panel allows for the characterization and differentiation of a myriad of microbial species.

The 16S V4 (or V3-V4) region of bacteria and archaea and 18S ITS1 (or ITS1-ITS2) region of fungi are amplified by PCR, and has indices and adapters attached after clean-up using CeleMag Beads for NGS and bioinformatics analysis. Various analysis reports are provided through Celemics’ robust analysis pipeline according to the customer’s study purposes.

Metagenomic Sequencing
Features & Benefits

Flexible Panel Design

At Celemics, we can offer both ready-to-use and flexible custom panel design options that best suits the purpose for individual customer. For the most popular metagenomic sequencing regions, we have panel with V3 or V3-V4 region for sequencing bacteria available, along with various customizable options and for fungal sequencing, we can offer ready-to-use panel set of ITS1 or ITS1-ITS2 region.

16S rRNA sequencing for bacteria

Metagenomic Sequencing

18S ITS sequencing for fungi

Metagenomic Sequencing

Support Bioinformatics Analysis for Classification and Diversity

By Celemics’ bioinformatics analysis pipeline, various types of analysis for the microbes are supported including taxonomy classification and diversity. As a company with our exclusive BI pipeline, we offer analysis result in diverse formats for comprehensive metagenomic insights.

Example of metagenomic sequencing analysis report

Results presented above are a few selected examples of the metagenomics sequencing results that Celemics provides. Contact us for more information.

Taxonomy analysis

Example of metagenomic sequencing analysis report-Taxonomy-analysis

Alpha rarefaction

Example of metagenomic sequencing analysis report-Alpha-rarefaction

Alpha diversity

Example of metagenomic sequencing analysis report-Alpha-diversity

Beta diversity

Example of metagenomic sequencing analysis report-Beta-diversity
Workflow

NGS-based metagenomic analysis workflow

  • By Celemics’ BI analysis pipeline, various types of analysis for the microbes are supported including taxonomy classification and diversity.

Raw Sequences

Representative

sequences

Taxonomy

classification

Diversity analyses

Feature table

Denoising

NGS-based metagenomic analysis workflow
NGS-based metagenomic analysis workflow

Raw Sequences

Denoising

Representative

sequences

Feature table

Taxonomy

classification

Diversity

analyses

Related Products

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Highly optimized, user- convenient NGS library preparation kit for all Celemics panels

Celemics Analysis Service

End-to-end complete Bioinformatics solution; Trust CAS with your BI analysis

Streptavidin Bead

Incomparable quality magnetic bead for simple, flexible, and reproducible purification

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Market-leading yield and accuracy with minimized PCR bias. Includes all reaction components for PCR

Resources

Technical Resources

[Product Overview] Metagenomic Sequencing Service & Kit

[Product Overview] Celemics Target Enrichment Panel

[Catalogue] Celemics Products & Service Catalogue_All Products & Service

Safety Data Sheets

MSDS_Metagenomic Sequencing_Illumina

MSDS_Metagenomic Sequencing_Thermo Fisher

MSDS_Metagenomic Sequencing_MGI

References

Foods

Characterisation of Lactobacillus plantarum of Dairy-Product Origin for Probiotic Chèvre Cheese Production

Ngamsomchat A, Kaewkod T, Konkit M, Tragoolpua Y, Bovonsombut S, Chitov T. Characterisation of Lactobacillus plantarum of Dairy-Product Origin for Probiotic Chèvre Cheese Production. Foods. 2022 Mar 24;11(7):934.

 

DOI 10.3390/foods11070934


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Bioscience of Microbiota, Food and Health

Investigation of gut microbiota and short-chain fatty acids in Strongyloides stercoralis-infected patients in a rural community

Nguyen HT, Hongsrichan N, Intuyod K, Pinlaor P, Yingklang M, Chaidee A, et al. Investigation of gut microbiota and short-chain fatty acids in Strongyloides stercoralis-infected patients in a rural community. Biosci Microbiota Food Health. 2022;41(3):121–9.

 

DOI 10.12938/bmfh.2021-054


View Detail >

Pedosphere

Metagenetics of fairy rings reveals complex and variable fungal communities

Xu S, Dong K, Lee S, Ogwu MC, Undrakhbold S, Singh D, et al. Metagenetics of fairy rings reveals complex and variable fungal communities. Pedosphere [Internet]. 2022 Jun 7 [cited 2023 Feb 20]; Available from: https://www.sciencedirect.com/science/article/pii/S1002016022000492

 

DOI 10.1016/j.pedsph.2022.06.043


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J Fungi

First Isolation of Pseudogymnoascus destructans, the Fungal Causative Agent of White-Nose Syndrome, in Korean Bats (Myotis petax)

Kim YS, Yang MS, Jeong CG, Chung CU, Oem JK. First Isolation of Pseudogymnoascus destructans, the Fungal Causative Agent of White-Nose Syndrome, in Korean Bats (Myotis petax). J Fungi (Basel). 2022 Oct 12;8(10):1072.

 

DOI 10.3390/jof8101072


View Detail >